The TECA BARD atmospheric river detector. More...

#include <teca_bayesian_ar_detect.h>

Inheritance diagram for teca_bayesian_ar_detect:

Collaboration diagram for teca_bayesian_ar_detect:

Public Member Functions
std::shared_ptr< teca_bayesian_ar_detect >	shared_from_this ()

std::shared_ptr< teca_bayesian_ar_detect const >	shared_from_this () const

	teca_bayesian_ar_detect (const teca_bayesian_ar_detect &src)=delete

	teca_bayesian_ar_detect (teca_bayesian_ar_detect &&src)=delete

teca_bayesian_ar_detect &	operator= (const teca_bayesian_ar_detect &src)=delete

teca_bayesian_ar_detect &	operator= (teca_bayesian_ar_detect &&src)=delete

const char *	get_class_name () const override

void	set_thread_pool_size (int n_threads)

unsigned int	get_thread_pool_size () const noexcept
	Get the number of threads in the pool. More...

void	set_input_connection (unsigned int id, const teca_algorithm_output_port &port) override

ivt_variable
Sets the name of the array containing the IVT field to detect ARs in.
void	set_ivt_variable (const std::string &v)

const std::string &	get_ivt_variable () const

min_ivt_variable
Set the names of the minimum IVT column in the parameter table.
void	set_min_ivt_variable (const std::string &v)

const std::string &	get_min_ivt_variable () const

min_component_area_variable
Set the names of the minimum area column in the parameter table.
void	set_min_component_area_variable (const std::string &v)

const std::string &	get_min_component_area_variable () const

hwhm_latitude_variable
Set the names of the HWHM column in the parameter table.
void	set_hwhm_latitude_variable (const std::string &v)

const std::string &	get_hwhm_latitude_variable () const

probability variable
Set the name of the variable to store output probability as.
void	set_ar_probability_variable (const std::string &v)

const std::string &	get_ar_probability_variable () const

bind_threads
set/get thread affinity mode. When 0 threads are not bound CPU cores, allowing for migration among all cores. This will likely degrade performance. Default is 1.
void	set_bind_threads (const int &v)

const int &	get_bind_threads () const

stream_size
set the smallest number of datasets to gather per call to execute. the default (-1) results in all datasets being gathered. In practice more datasets will be returned if ready
void	set_stream_size (const int &v)

const int &	get_stream_size () const

poll_interval
set the duration in nanoseconds to wait between checking for completed tasks
void	set_poll_interval (const long long &v)

const long long &	get_poll_interval () const

threads_per_device
Set the number of threads to service each GPU/device. Other threads will use the CPU.
void	set_threads_per_device (const int &v)

const int &	get_threads_per_device () const

ranks_per_device
Set the number of ranks that have access to each GPU/device. Other ranks will use the CPU.
void	set_ranks_per_device (const int &v)

const int &	get_ranks_per_device () const

propagate_device_assignment
When set device assignment is taken from down stream request. Otherwise the thread executing the pipeline will provide the assignment.
void	set_propagate_device_assignment (const int &v)

const int &	get_propagate_device_assignment () const

Public Member Functions inherited from teca_algorithm
	teca_algorithm (const teca_algorithm &src)=delete

	teca_algorithm (teca_algorithm &&src)=delete

teca_algorithm &	operator= (const teca_algorithm &src)=delete

teca_algorithm &	operator= (teca_algorithm &&src)=delete

void	set_communicator (MPI_Comm comm)

MPI_Comm	get_communicator ()
	get the active communicator More...

virtual teca_algorithm_output_port	get_output_port (unsigned int port=0)

void	set_input_connection (const teca_algorithm_output_port &port)
	set an input to this algorithm More...

virtual void	remove_input_connection (unsigned int id)
	remove input connections More...

void	clear_input_connections ()
	remove all input connections More...

const_p_teca_dataset	get_output_data (unsigned int port=0)

void	pop_cache (unsigned int port=0, int top=0)

void	set_cache_size (unsigned int n)
	set the cache size. the default is 1. (threadsafe) More...

virtual int	update ()
	execute the pipeline from this instance up. More...

virtual int	update (unsigned int port)
	execute the pipeline from this instance up. More...

virtual teca_metadata	update_metadata (unsigned int port=0)
	get meta data considering this instance up. More...

void	set_executive (p_teca_algorithm_executive exe)
	set the executive More...

p_teca_algorithm_executive	get_executive ()
	get the executive More...

virtual void	to_stream (std::ostream &s) const

virtual void	from_stream (std::istream &s)
	deserialize from the stream. More...

void	set_verbose (const int &v)

const int &	get_verbose () const

Static Public Member Functions
static p_teca_bayesian_ar_detect	New ()

Protected Member Functions
std::string	get_label_variable (const teca_metadata &request)

Protected Member Functions inherited from teca_algorithm
void	set_number_of_input_connections (unsigned int n)

void	set_number_of_output_ports (unsigned int n)

void	set_modified (unsigned int port)
	an overload to set_modified by port More...

virtual teca_metadata	get_cache_key (unsigned int port, const teca_metadata &request) const

virtual teca_metadata	get_output_metadata (teca_algorithm_output_port &current)

virtual const_p_teca_dataset	request_data (teca_algorithm_output_port &port, const teca_metadata &request)

virtual int	validate_cache (teca_algorithm_output_port &current)

virtual void	clear_modified (teca_algorithm_output_port current)

const_p_teca_dataset	get_output_data (unsigned int port, const teca_metadata &request)

int	cache_output_data (unsigned int port, const teca_metadata &request, const_p_teca_dataset &data)

void	clear_cache (unsigned int port)
	clear the cache on the given output port More...

unsigned int	get_number_of_input_connections ()
	get the number of input connections More...

teca_algorithm_output_port &	get_input_connection (unsigned int i)

void	clear_modified (unsigned int port)
	clear the modified flag on the i'th output More...

int	get_modified (unsigned int port) const
	return the output port's modified flag value More...

Additional Inherited Members
Protected Attributes inherited from teca_algorithm
int	verbose

Detailed Description

The TECA BARD atmospheric river detector.

Given a point wise IVT (integrated vapor transport) field and a training parameter table computes the point wise probability of an atmospheric river using the TECA BARD algorithm.

Required inputs:

1. IVT (integrated vapor transport) array on a Cartesian nesh.
2. a compatible parameter table. columns of which are : min IVT,
   component area, HWHM lattitude

The names of the input varibale and columns can be specified at run time through algorithm properties.

Produces:

A Cartesian mesh with probability of an AR stored in the point centered
array named "ar_probability". The diagnostic quantites "ar_count" amd
"parameter_table_row" are stored in information arrays.

For more information see:

O’Brien, T. A., Risser, M. D., Loring, B., Elbashandy, A. A., Krishnan, H., Johnson, J., Patricola, C. M., O’Brien, J. P., Mahesh, A., Arriaga Ramirez, S., Rhoades, A. M., Charn, A., Inda Díaz, H., & Collins, W. D. (2020). Detection of atmospheric rivers with inline uncertainty quantification: TECA-BARD v1.0.1. Geoscientific Model Development, 13(12), 6131–6148. https://doi.org/10.5194/gmd-13-6131-2020

Member Function Documentation

◆ get_ar_probability_variable()

const std::string& teca_bayesian_ar_detect::get_ar_probability_variable ( ) const

inline

Get the value of the ar_probability_variable algorithm property

◆ get_bind_threads()

const int& teca_bayesian_ar_detect::get_bind_threads ( ) const

inline

Get the value of the bind_threads algorithm property

◆ get_class_name()

const char* teca_bayesian_ar_detect::get_class_name ( ) const

inlineoverridevirtual

returns the name of the class

Implements teca_algorithm.

◆ get_hwhm_latitude_variable()

const std::string& teca_bayesian_ar_detect::get_hwhm_latitude_variable ( ) const

inline

Get the value of the hwhm_latitude_variable algorithm property

◆ get_ivt_variable()

const std::string& teca_bayesian_ar_detect::get_ivt_variable ( ) const

inline

Get the value of the ivt_variable algorithm property

◆ get_min_component_area_variable()

const std::string& teca_bayesian_ar_detect::get_min_component_area_variable ( ) const

inline

Get the value of the min_component_area_variable algorithm property

◆ get_min_ivt_variable()

const std::string& teca_bayesian_ar_detect::get_min_ivt_variable ( ) const

inline

Get the value of the min_ivt_variable algorithm property

◆ get_poll_interval()

const long long& teca_bayesian_ar_detect::get_poll_interval ( ) const

inline

Get the value of the poll_interval algorithm property

◆ get_propagate_device_assignment()

const int& teca_bayesian_ar_detect::get_propagate_device_assignment ( ) const

inline

Get the value of the propagate_device_assignment algorithm property

◆ get_ranks_per_device()

const int& teca_bayesian_ar_detect::get_ranks_per_device ( ) const

inline

Get the value of the ranks_per_device algorithm property

◆ get_stream_size()

const int& teca_bayesian_ar_detect::get_stream_size ( ) const

inline

Get the value of the stream_size algorithm property

◆ get_thread_pool_size()

unsigned int teca_bayesian_ar_detect::get_thread_pool_size ( ) const

noexcept

Get the number of threads in the pool.

◆ get_threads_per_device()

const int& teca_bayesian_ar_detect::get_threads_per_device ( ) const

inline

Get the value of the threads_per_device algorithm property

◆ New()

static p_teca_bayesian_ar_detect teca_bayesian_ar_detect::New ( )

inlinestatic

Returns an instance of teca_bayesian_ar_detect

◆ set_ar_probability_variable()

void teca_bayesian_ar_detect::set_ar_probability_variable ( const std::string & v )

inline

Set the value of the ar_probability_variable algorithm property

◆ set_bind_threads()

void teca_bayesian_ar_detect::set_bind_threads ( const int & v )

inline

Set the value of the bind_threads algorithm property

◆ set_hwhm_latitude_variable()

void teca_bayesian_ar_detect::set_hwhm_latitude_variable ( const std::string & v )

inline

Set the value of the hwhm_latitude_variable algorithm property

◆ set_input_connection()

void teca_bayesian_ar_detect::set_input_connection	(	unsigned int	id,
		const teca_algorithm_output_port &	port
	)

overridevirtual

override the input connections because we are going to take the first input and use it to generate metadata. the second input then becomes the only one the pipeline knows about.

Reimplemented from teca_algorithm.

◆ set_ivt_variable()

void teca_bayesian_ar_detect::set_ivt_variable ( const std::string & v )

inline

Set the value of the ivt_variable algorithm property

◆ set_min_component_area_variable()

void teca_bayesian_ar_detect::set_min_component_area_variable ( const std::string & v )

inline

Set the value of the min_component_area_variable algorithm property

◆ set_min_ivt_variable()

void teca_bayesian_ar_detect::set_min_ivt_variable ( const std::string & v )

inline

Set the value of the min_ivt_variable algorithm property

◆ set_poll_interval()

void teca_bayesian_ar_detect::set_poll_interval ( const long long & v )

inline

Set the value of the poll_interval algorithm property

◆ set_propagate_device_assignment()

void teca_bayesian_ar_detect::set_propagate_device_assignment ( const int & v )

inline

Set the value of the propagate_device_assignment algorithm property

◆ set_ranks_per_device()

void teca_bayesian_ar_detect::set_ranks_per_device ( const int & v )

inline

Set the value of the ranks_per_device algorithm property

◆ set_stream_size()

void teca_bayesian_ar_detect::set_stream_size ( const int & v )

inline

Set the value of the stream_size algorithm property

◆ set_thread_pool_size()

void teca_bayesian_ar_detect::set_thread_pool_size ( int n_threads )

Set the number of threads in the pool. Setting to -1 results in a thread per core factoring in all MPI ranks running on the node. the default is -1.

Note: this constructs the thread pool. properties that affect the thread pool must be set before construction.

◆ set_threads_per_device()

void teca_bayesian_ar_detect::set_threads_per_device ( const int & v )

inline

Set the value of the threads_per_device algorithm property

◆ shared_from_this() [1/2]

std::shared_ptr< teca_bayesian_ar_detect > teca_bayesian_ar_detect::shared_from_this ( )

inline

Enables the static constructor

◆ shared_from_this() [2/2]

std::shared_ptr< teca_bayesian_ar_detect const> teca_bayesian_ar_detect::shared_from_this ( ) const

inline

Enables the static constructor

The documentation for this class was generated from the following file:

develop/alg/teca_bayesian_ar_detect.h

Public Member Functions

Static Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

Member Function Documentation

◆ get_ar_probability_variable()

◆ get_bind_threads()

◆ get_class_name()

◆ get_hwhm_latitude_variable()

◆ get_ivt_variable()

◆ get_min_component_area_variable()

◆ get_min_ivt_variable()

◆ get_poll_interval()

◆ get_propagate_device_assignment()

◆ get_ranks_per_device()

◆ get_stream_size()

◆ get_thread_pool_size()

◆ get_threads_per_device()

◆ New()

◆ set_ar_probability_variable()

◆ set_bind_threads()

◆ set_hwhm_latitude_variable()

◆ set_input_connection()

◆ set_ivt_variable()

◆ set_min_component_area_variable()

◆ set_min_ivt_variable()

◆ set_poll_interval()

◆ set_propagate_device_assignment()

◆ set_ranks_per_device()

◆ set_stream_size()

◆ set_thread_pool_size()

◆ set_threads_per_device()

◆ shared_from_this() [1/2]

◆ shared_from_this() [2/2]