TECA
The Toolkit for Extreme Climate Analysis
teca_shape_file_mask Class Reference

Generates a valid value mask defined by regions in the given ESRI shape file. More...

#include <teca_shape_file_mask.h>

Inheritance diagram for teca_shape_file_mask:
[legend]
Collaboration diagram for teca_shape_file_mask:
[legend]

Public Member Functions

std::shared_ptr< teca_shape_file_maskshared_from_this ()
 
std::shared_ptr< teca_shape_file_mask const > shared_from_this () const
 
 teca_shape_file_mask (const teca_shape_file_mask &src)=delete
 
 teca_shape_file_mask (teca_shape_file_mask &&src)=delete
 
teca_shape_file_maskoperator= (const teca_shape_file_mask &src)=delete
 
teca_shape_file_maskoperator= (teca_shape_file_mask &&src)=delete
 
const char * get_class_name () const override
 
shape_file

Set the path to the shape file. This file is read by MPI rank 0 and distributed to the others in parallel runs

void set_shape_file (const std::string &v)
 
const std::string & get_shape_file () const
 
mask_variables

set the names of the variables to store the generated mask in each variable will contain a reference to the mask

size_t get_number_of_mask_variables ()
 
void append_mask_variable (const std::string &v)
 
void set_mask_variable (const std::string &v)
 
void set_mask_variable (size_t i, const std::string &v)
 
void set_mask_variables (const std::vector< std::string > &v)
 
void set_mask_variables (const std::initializer_list< std::string > &&l)
 
const std::string & get_mask_variable (size_t i) const
 
const std::vector< std::string > & get_mask_variables () const
 
void clear_mask_variables ()
 
normalize_coordinates

set this flag to transform the x coordinates from [-180, 180] to [0, 360]

void set_normalize_coordinates (const int &v)
 
const int & get_normalize_coordinates () const
 
number_of_cuda_streams

sets the number of streams to use when searching the mesh for polygon intersections.

void set_number_of_cuda_streams (const int &v)
 
const int & get_number_of_cuda_streams () const
 
- Public Member Functions inherited from teca_algorithm
 teca_algorithm (const teca_algorithm &src)=delete
 
 teca_algorithm (teca_algorithm &&src)=delete
 
teca_algorithmoperator= (const teca_algorithm &src)=delete
 
teca_algorithmoperator= (teca_algorithm &&src)=delete
 
void set_communicator (MPI_Comm comm)
 
MPI_Comm get_communicator ()
 get the active communicator More...
 
virtual teca_algorithm_output_port get_output_port (unsigned int port=0)
 
void set_input_connection (const teca_algorithm_output_port &port)
 set an input to this algorithm More...
 
virtual void set_input_connection (unsigned int id, const teca_algorithm_output_port &port)
 set an input to this algorithm More...
 
virtual void remove_input_connection (unsigned int id)
 remove input connections More...
 
void clear_input_connections ()
 remove all input connections More...
 
const_p_teca_dataset get_output_data (unsigned int port=0)
 
void pop_cache (unsigned int port=0, int top=0)
 
void set_cache_size (unsigned int n)
 set the cache size. the default is 1. (threadsafe) More...
 
virtual int update ()
 execute the pipeline from this instance up. More...
 
virtual int update (unsigned int port)
 execute the pipeline from this instance up. More...
 
virtual teca_metadata update_metadata (unsigned int port=0)
 get meta data considering this instance up. More...
 
void set_executive (p_teca_algorithm_executive exe)
 set the executive More...
 
p_teca_algorithm_executive get_executive ()
 get the executive More...
 
virtual void to_stream (std::ostream &s) const
 
virtual void from_stream (std::istream &s)
 deserialize from the stream. More...
 
void set_verbose (const int &v)
 
const int & get_verbose () const
 

Static Public Member Functions

static p_teca_shape_file_mask New ()
 

Protected Member Functions

void set_modified () override
 overriden so that cached data is cleared More...
 
teca_metadata get_mask_array_attributes (unsigned long size)
 generate attributes for the output arrays More...
 
- Protected Member Functions inherited from teca_algorithm
void set_number_of_input_connections (unsigned int n)
 
void set_number_of_output_ports (unsigned int n)
 
void set_modified (unsigned int port)
 an overload to set_modified by port More...
 
virtual teca_metadata get_cache_key (unsigned int port, const teca_metadata &request) const
 
virtual teca_metadata get_output_metadata (teca_algorithm_output_port &current)
 
virtual const_p_teca_dataset request_data (teca_algorithm_output_port &port, const teca_metadata &request)
 
virtual int validate_cache (teca_algorithm_output_port &current)
 
virtual void clear_modified (teca_algorithm_output_port current)
 
const_p_teca_dataset get_output_data (unsigned int port, const teca_metadata &request)
 
int cache_output_data (unsigned int port, const teca_metadata &request, const_p_teca_dataset &data)
 
void clear_cache (unsigned int port)
 clear the cache on the given output port More...
 
unsigned int get_number_of_input_connections ()
 get the number of input connections More...
 
teca_algorithm_output_portget_input_connection (unsigned int i)
 
void clear_modified (unsigned int port)
 clear the modified flag on the i'th output More...
 
int get_modified (unsigned int port) const
 return the output port's modified flag value More...
 

Additional Inherited Members

- Protected Attributes inherited from teca_algorithm
int verbose
 

Detailed Description

Generates a valid value mask defined by regions in the given ESRI shape file.

The teca_shape_file_mask generates a mask on a 2D mesh where mesh points are assigned a value of 1 where they fall inside any one of the polygons defined in the named ESRI shape file, and 0 everywhere else. The input mesh is passed through to the output with the mask added. By default a transform on the x coordinates of the polygons from [-180, 180] to [0, 360] is applied. If this is undesirable it can be disabled by setting the normalize_coordinates property to 0.

Attention
Currently there is no check on the coordinate system specified in the shapefile. This could result in a mask of all zeros when the shapefile and input mesh use a different coodinate system.

Member Function Documentation

◆ append_mask_variable()

void teca_shape_file_mask::append_mask_variable ( const std::string &  v)
inline

append to the mask_variable algorithm vector property

◆ clear_mask_variables()

void teca_shape_file_mask::clear_mask_variables ( )
inline

clear the mask_variable algorithm vector property

◆ get_class_name()

const char* teca_shape_file_mask::get_class_name ( ) const
inlineoverridevirtual

returns the name of the class

Implements teca_algorithm.

◆ get_mask_array_attributes()

teca_metadata teca_shape_file_mask::get_mask_array_attributes ( unsigned long  size)
protected

generate attributes for the output arrays

◆ get_mask_variable()

const std::string& teca_shape_file_mask::get_mask_variable ( size_t  i) const
inline

get the i-th element of the mask_variable algorithm vector property

◆ get_mask_variables()

const std::vector< std::string >& teca_shape_file_mask::get_mask_variables ( ) const
inline

get the mask_variable algorithm vector property

◆ get_normalize_coordinates()

const int& teca_shape_file_mask::get_normalize_coordinates ( ) const
inline

Get the value of the normalize_coordinates algorithm property

◆ get_number_of_cuda_streams()

const int& teca_shape_file_mask::get_number_of_cuda_streams ( ) const
inline

Get the value of the number_of_cuda_streams algorithm property

◆ get_number_of_mask_variables()

size_t teca_shape_file_mask::get_number_of_mask_variables ( )
inline

get the size of the mask_variable algorithm vector property

◆ get_shape_file()

const std::string& teca_shape_file_mask::get_shape_file ( ) const
inline

Get the value of the shape_file algorithm property

◆ New()

static p_teca_shape_file_mask teca_shape_file_mask::New ( )
inlinestatic

Returns an instance of teca_shape_file_mask

◆ set_mask_variable() [1/2]

void teca_shape_file_mask::set_mask_variable ( const std::string &  v)
inline

set the mask_variable algorithm vector property to a single value

◆ set_mask_variable() [2/2]

void teca_shape_file_mask::set_mask_variable ( size_t  i,
const std::string &  v 
)
inline

set the i-th element of the mask_variable algorithm vector property

◆ set_mask_variables() [1/2]

void teca_shape_file_mask::set_mask_variables ( const std::initializer_list< std::string > &&  l)
inline

set the mask_variable algorithm vector property

◆ set_mask_variables() [2/2]

void teca_shape_file_mask::set_mask_variables ( const std::vector< std::string > &  v)
inline

set the mask_variable algorithm vector property

◆ set_modified()

void teca_shape_file_mask::set_modified ( )
overrideprotectedvirtual

overriden so that cached data is cleared

Reimplemented from teca_algorithm.

◆ set_normalize_coordinates()

void teca_shape_file_mask::set_normalize_coordinates ( const int &  v)
inline

Set the value of the normalize_coordinates algorithm property

◆ set_number_of_cuda_streams()

void teca_shape_file_mask::set_number_of_cuda_streams ( const int &  v)
inline

Set the value of the number_of_cuda_streams algorithm property

◆ set_shape_file()

void teca_shape_file_mask::set_shape_file ( const std::string &  v)
inline

Set the value of the shape_file algorithm property

◆ shared_from_this() [1/2]

std::shared_ptr< teca_shape_file_mask > teca_shape_file_mask::shared_from_this ( )
inline

Enables the static constructor

◆ shared_from_this() [2/2]

std::shared_ptr< teca_shape_file_mask const> teca_shape_file_mask::shared_from_this ( ) const
inline

Enables the static constructor


The documentation for this class was generated from the following file: